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"Scientific Clojure, a bird's eye view" by Thomas Clark
Explore Scientific Clojure's ecosystem with Thomas Clark, covering data manipulation libraries, Wolfram integration, visualization tools, and workflows for scientific computing.
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Scientific Clojure focuses on flexible, data-oriented approaches rather than rigid frameworks
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Key libraries replacing Python scientific stack:
- DtypeNext (NumPy replacement)
- FastMath (mathematical operations)
- Tablecloth (Pandas-like data manipulation)
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Wolfram integration available through:
- Wolframite 1.0 bridge
- EMI library for math operations
- Support for custom symbols and Unicode
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Visual tools and plotting:
- Clay for lightweight documentation and visualization
- Hanami/Vega system for interactive plots
- Plots treated as data for flexibility
- Table Plot library in development
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Documentation and testing:
- Documentation generated from running code
- Documentation serves as tests
- Focus on tutorials that are executable tests
- Integration with Quarto for multiple output formats
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Scientific workflow considerations:
- Scientists prioritize novelty over stability
- Need for simple data transformations between domains
- Importance of equation handling and symbolic math
- Focus on adding new code rather than changing existing code
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Community aspects:
- Growing scientific Clojure ecosystem
- Emphasis on voluntary cooperation
- Benefits of being a smaller, focused community
- Active development in scientific computing space
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Interoperability:
- Strong Python interop capabilities
- Ability to gradually integrate existing workflows
- Data-oriented approach to library interfaces
- Support for larger-than-memory datasets